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applications/engineering
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E -
Equational Theorem Prover
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GMT -
Generic Mapping Tools
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GMT-coastlines -
Coastline data for GMT
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HippoDraw -
Interactive and Python scriptable data analysis application
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LabPlot -
Data Analysis and Visualization
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Macaulay2 -
System for algebraic geometry and commutative algebra
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PyQuante -
Python Quantum Chemistry
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PythonCAD -
Python scriptable CAD package
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R -
A language for data analysis and graphics
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R-BSgenome.Celegans.UCSC.ce2 -
Caenorhabditis elegans genome (UCSC Release ce2)
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R-BSgenome.Dmelanogaster.FlyBase.r51 -
Drosophila melanogaster genome (FlyBase r5.1)
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R-Biobase -
Base functions for Bioconductor
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R-BufferedMatrix -
A matrix data storage object method from bioconductor
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R-DBI -
Database interface module for R
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R-GeneR -
R for genes and sequences analysis
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R-IRanges -
Low-level containers for storing sets of integer ranges
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R-RSQLite -
SQLite database interface for R
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R-RScaLAPACK -
An interface to perform parallel computation on linear algebra problems using ScaLAPACK
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R-RUnit -
R Unit test framework
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R-affyio -
Tools for parsing Affymetrix data files
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R-car -
Companion to Applied Regression package for R
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R-hdf5 -
Interface to the NCSA HDF5 library
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R-hgu95av2probe -
Probe sequence data for microarrays of type hgu95av2
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R-lmtest -
Testing Linear Regression Models for R
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R-mAr -
R module to evaluate functions for multivariate AutoRegressive analysis
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R-multcomp -
Simultaneous inference for general linear hypotheses R Package
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R-mvtnorm -
Multivariate normal and T distribution R Package
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R-qtl -
Tools for analyzing QTL experiments
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R-qvalue -
Q-value estimation for false discovery rate control
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R-rlecuyer -
R interface to RNG with multiple streams
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R-systemfit -
Simultaneous Equation Estimation R Package
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R-waveslim -
R module, Basic wavelet routines for 1,2 and 3-dimensional signal processing
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R-wavethresh -
R module, Software to perform wavelet statistics and transforms
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R-zoo -
Z's ordered observations for irregular time series
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SIBsim4 -
Align expressed RNA sequences on a DNA template
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accrete -
Accrete is a physical simulation of solar system planet formation
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alliance -
VLSI EDA System
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alt-ergo -
Alt-Ergo automatic theorem prover
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archimedes -
2D Quantum Monte Carlo simulator for semiconductor devices
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avarice -
Program for interfacing the Atmel JTAG ICE to GDB
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avrdude -
Software for programming Atmel AVR Microcontroller
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bc -
GNU's bc (a numeric processing language) and dc (a calculator)
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bkchem -
Chemical drawing program
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boinc-client -
The BOINC client core
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calc -
Arbitrary precision arithmetic system and calculator
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cddlib -
A library for generating all vertices in convex polyhedrons
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cdo -
A program for manipulating GRIB/NetCDF/SERVICE/EXTRA files
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chktex -
LaTex semantic checker
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chntpw -
Change passwords in Windows SAM files
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cloudy -
Spectral synthesis code to simulate conditions in interstellar matter
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coq -
Coq proof management system
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drawtiming -
A command line tool for generating timing diagrams
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drgeo -
Interactive educational geometry software
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drgeo-doc -
Html documentation for drgeo
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ds9 -
Astronomical Data Visualization Application
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dx -
Open source version of IBM's Visualization Data Explorer
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electric -
Sophisticated Java based VLSI CAD System
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elph -
Tool to find motifs in a set of DNA or protein sequences
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esorex -
Recipe Execution Tool of the European Southern Observatory
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extrema -
Extrema is a powerful visualization and data analysis tool
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fet -
Open source free timetabling software
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fityk -
Non-linear curve fitting and data analysis
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flint -
Fast Library for Number Theory
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freefem++ -
PDE solving tool
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freehdl -
GPLed free VHDL
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funtools -
FITS library and utilities
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g3data -
Program for extracting the data from scanned graphs
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gabedit -
GUI for computational chemistry
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galculator -
GTK 2 based scientific calculator
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gcx -
Data-reduction tool for CCD photometry
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gdl -
GNU Data Language
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gds2pov -
GDS2 layout file to POV-Ray conversion
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geda-docs -
Documentation for gEDA
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geda-examples -
Circuit examples for gEDA
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geda-gattrib -
Attribute editor for gEDA
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geda-gnetlist -
Netlister for the gEDA project
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geda-gschem -
Electronics schematics editor
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geda-gsymcheck -
Symbol checker for electronics schematics editor
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geda-symbols -
Electronic symbols for gEDA
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geda-utils -
Several utilities for the gEDA project
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genius -
An arbitrary precision integer and multiple precision floatingpoint calculator
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genus2reduction -
Computes Reductions of Genus 2 Proper Smooth Curves
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geomview -
Interactive 3D viewing program
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geos -
GEOS is a C++ port of the Java Topology Suite
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gerbv -
Gerber file viewer from the gEDA toolkit
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gfan -
Software for Computing Gröbner Fans and Tropical Varieties
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ggobi -
Open source visualization for exploring high-dimensional data
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glimmer -
System for finding genes in microbial DNA
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gmp-ecm -
Elliptic Curve Method for Integer Factorization
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gnome-chemistry-utils -
A set of chemical utilities
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gnucap -
The Gnu Circuit Analysis Package
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gnuplot -
A program for plotting mathematical expressions and data
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gnuradio -
Software defined radio framework
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gonvert -
Units conversion utility
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gperiodic -
Program for browsing the periodic table
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grace -
Numerical Data Processing and Visualization Tool
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grads -
Tool for easy acces, manipulation, and visualization of data
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grass -
GRASS - Geographic Resources Analysis Support System
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grc -
GUI for Gnuradio
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gresistor -
Gnome resistor color code calculator
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gromacs -
GROMACS - Fast, Free and Flexible Molecular Dynamics
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gsim85 -
An 8085 microprocessor simulator
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gtkwave -
Waveform Viewer
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gts -
GNU Triangulated Surface Library
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gwave -
GPLed Analog Waveform Viewing Environment
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harminv -
Program and library for solving the harmonic inversion problem
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hmmer -
Profile HMM software for protein sequence analysis
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iml -
Finds solutions to systems of linear equations over integers
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irsim -
Switch-level simulator used even for VLSI
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iverilog -
Icarus Verilog is a verilog compiler and simulator
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jday -
A simple command to convert calendar dates to julian dates
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jmol -
An open-source Java viewer for chemical structures in 3D
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kicad -
Electronic schematic diagrams and printed circuit board artwork
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kpolynome -
A polynome calculation program
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kst -
A data viewing program for KDE
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ktechlab -
Development and simulation of microcontrollers and electronic circuits
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lagan -
Local, global, and multiple alignment of DNA sequences
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linsmith -
A Smith charting program
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lybniz -
A function graph plotter
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magic -
A very capable VLSI layout tool
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mapnik -
Free Toolkit for developing mapping applications
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mathomatic -
Small, portable symbolic math program
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maxima -
Symbolic Computation Program
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messiggy -
Messiggy is a database of celestial objects
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minisat2 -
A minimalistic, open-source SAT solver
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mona -
A decision procedure for the WS1S and WS2S logics
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mpfi -
An interval arithmetic library based on MPFR
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munipack -
The C-Munipack is an astrophotometry software package
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ncl -
NCAR Command Language and NCAR Graphics
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nco -
Suite of programs for manipulating NetCDF/HDF4 files
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ncview -
A visual browser for netCDF format files
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netcdf -
Libraries for the Unidata network Common Data Form
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netcdf-decoders -
Converts WMO GRIB products into NetCDF files
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netgen -
LVS netlist comparison tool for VLSI
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ngspice -
A mixed level/signal circuit simulator
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nightfall -
Nightfall is an astronomy application for emulation of eclipsing stars
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nxt_python -
Nxt_python is a package for controlling a LEGO NXT robot using python
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octave -
A high-level language for numerical computations
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octave-forge -
Contributed functions for octave
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ogdi -
Open Geographic Datastore Interface
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orpie -
A fullscreen console-based RPN calculator
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osiv -
Open Source Image Velocimetry
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palp -
A Package for Analyzing Lattice Polytopes
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paraview -
Parallel visualization application
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pcb -
An interactive printed circuit board editor
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perl-Verilog -
Verilog parsing routines
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pharosc -
VLSI and ASIC Technology Standard Cell Libraries
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picviz -
Parallel coordinates plotter
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pipviewer -
Visualizer for multiple alignments of genomic sequences
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plplot -
Library of functions for making scientific plots
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polyxmass-bin -
The GNU polyxmass software suite
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pp3 -
Creation of sky charts in Postscript or PDF format
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proj -
Cartographic projection software (PROJ.4)
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pspp -
A program for statistical analysis of sampled data
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pygrace -
Python bindings for grace
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pymol -
PyMOL Molecular Graphics System
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python-ferari -
Optimizer for finite element code
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python-fiat -
Generation of arbitrary order instances of the Lagrange elements
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python-instant -
Python module for instant inlining of C and C++ code
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qalculate-gtk -
A multi-purpose desktop calculator for GNU/Linux
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qalculate-kde -
A multi-purpose desktop calculator for GNU/Linux
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qcad -
Simple 2D CAD program
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qd -
Double-Double and Quad-Double Arithmetic
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qgis -
A user friendly Open Source Geographic Information System
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qtgpsc -
A client for the gpsd GPS server
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qtoctave -
Frontend for Octave
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qucs -
Circuit simulator
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radial -
A simple program for calculating radial velocities of stars in a binary system
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rmap -
Rmap is a package that is able to generate images of the earth from a distance
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roundup -
Simple and flexible issue-tracking system
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scidavis -
Scientific Data Analysis and Visualization
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scitools -
A Python library for scientific computing
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screenruler -
GNOME screen ruler
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scrip -
Spherical Coordinate Remapping and Interpolation Package (SCRIP)
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sdcc -
Small Device C Compiler
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seaview -
Graphical multiple sequence alignment editor
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sextractor -
Extract catalogs of sources from astronomical images
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siril -
Siril is an astronomical image processing software for Linux
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sk2py -
Migrates Cadence Skill based PCells to Python PyCells
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spacechart -
A 3D star-mapping program
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speedcrunch -
A fast power user calculator for KDE
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starplot -
3-dimensional perspective star map viewer
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starplot-contrib -
Stellar data set for use by the StarPlot tool
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starplot-gliese3 -
Stellar data set for use by the StarPlot tool
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starplot-yale5 -
Stellar data set for use by the StarPlot tool
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stp -
Constraint solver/decision procedure
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swarp -
Tool that resamples and co-adds together FITS images
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symmetrica -
A Collection of Routines for Solving Symmetric Groups
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sympow -
Special Values of Symmetric Power Elliptic Curve L-Functions
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tachyon -
Parallel / Multiprocessor Ray Tracing System
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tcd-utils -
TCD (Tide Constituent Database) Utils
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tex-zfuzz -
Type-checker and LaTeX style for Z spec language
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tideEditor -
Editor for Tide Constituent Database (TCD) files
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tkgate -
An event driven digital circuit simulator
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toped -
VLSI IC Layout Editor
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torch -
Torch is a simple machine-learning library
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uisp -
Universal In-System Programmer for Atmel AVR and 8051
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units -
A utility for converting amounts from one unit to another
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vaspview -
VASP Data Viewer
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vhd2vl -
VHDL to Verilog translator
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vhybridize -
Virtual Hybridization command line tools
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wcstools -
Software utilities to display and manipulate the WCS of a FITS image
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weka -
Waikato Environment for Knowledge Analysis
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wgrib -
Manipulate, inventory and decode GRIB files
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wgrib2 -
Manipulate, inventory and decode GRIB2 files
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why -
Why software verification platform
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wise2 -
Tools for comparison of biopolymers
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wvs-data -
World Vector Shoreline data
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wxMaxima -
Graphical user interface for Maxima
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xcircuit -
Electronic circuit schematic drawing program
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xdrawchem -
2D chemical structures drawing tool
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xpa -
The X Public Access messaging system
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xtide -
Calculate tide all over the world
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xvarstar -
Astronomical program used for searching GCVS
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zenon -
Automated theorem prover for first-order classical logic